Dr. Daniel Christopher Hoinkiss

  • Research Scientist
  • MR Physics
  • Prospective Motion Correction in MRI
  • Medical Imaging
  • Image Processing

Publications

2024

Padrela B, Mahroo A, Tee M, Sneve MH, Moyaert P, Geier O, Kuijer JPA, Beun S, Nordhøy W, Zhu YD, Buck MA, Hoinkiss DC, Konstandin S, Huber J, Wiersinga J, Rikken R, de Leeuw D, Grydeland H, Tippett L, Cawston EE, Ozturk-Isik E, Linn J, Brandt M, Tijms BM, van de Giessen EM, Muller M, Fjell A, Walhovd K, Bjørnerud A, Pålhaugen L, Selnes P, Clement P, Achten E, Anazodo U, Barkhof F, Hilal S, Fladby T, Eickel K, Morgan C, Thomas DL, Petr J, Günther M, Mutsaerts HJMM (2024) Developing blood-brain barrier arterial spin labelling as a non-invasive early biomarker of Alzheimer’s disease (DEBBIE-AD): a prospective observational multicohort study protocol. BMJ Open 14(3):e081635

2023

Breutigam N-J, Hoinkiss DC, Konstandin S, Buck MA, Mahroo A, Eickel K, von Samson-Himmelstjerna F, Günther M (2023) Subject-specific timing adaption in time-encoded arterial spin labeling imaging. Magnetic Resonance Materials in Physics, Biology and Medicine
Hoinkiss DC, Huber J, Plump C, Lüth C, Drechsler R, Günther M (2023) AI-driven and automated MRI sequence optimization in scanner-independent MRI sequences formulated by a domain-specific language. Frontiers in Neuroimaging – Neuroimaging Analysis and Protocols 2
Huber J, Günther M, Hoinkiss DC (2023) A novel calibration scan for subject-specific tissue suppression in arterial spin labeling. Proceedings of the 39th Annual Scientific Meeting of the ESMRMB. P186
Huber J, Hoinkiss DC, Plump C, Lüth C, Drechsler R, Günther M (2023) High-level and modular description of MRI sequences using domain-specific language. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 2225
Madore B, Hess AT, van Niekerk AMJ, Hoinkiss DC, Hucker P, Zaitsev M, Afacan O, Günther M (2023) External Hardware and Sensors, for Improved MRI. JMRI 57(3):690–705
Mahroo A, Konstandin S, Hoinkiss DC, Hirsch J, Günther M (2023) Increased Blood-brain Barrier Permeability in Response to Caffeine Challenge. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 2582
Nagtegaal M, Hoinkiss DC, Konstandin S, de Bresser J, Günther M, van Osch MJP (2023) Vendor-agnostic pulse programming on gammaSTAR: A traveling head experiment to test the Philips driver. Proceedings of the 39th Annual Scientific Meeting of the ESMRMB. LT54
Nagtegaal M, Konstandin S, Hoinkiss DC, Gross-Weege N, Schulz V, Günther M, van Osch T (2023) Vendor neutral pulse programming: Running gammaSTAR sequences on Philips Hardware. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 2217
Padrela B, Tee M, Sneve M, Mahroo A, Geier O, Thomas D, Morgan C, Moyaert P, Ozturk E, Nordhøy W, Pålhaugen L, Linn J, Selnes P, Eickel K, Konstandin S, Kuijer J, Hoinkiss DC, Breutigam NJ, Buck MA, Achten R, Barkhof F, Hilal S, Fladby T, Anazodo U, Petr J, Mutsaerts H, Günther M (2023) DEveloping Blood-Brain barrier arterial spin labeling as a non-Invasive Early biomarker (DEBBIE). Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 367
Schuppert C, Rospleszcz S, Hirsch JG, Hoinkiss DC, Köhn A, von Krüchten R, Russe MF, Keil T, Krist L, Schmidt B, Michels KB, Schipf S, Brenner H, Kröncke TJ, Pischon T, Niendorf T, Schulz-Menger J, Forsting M, Völzke H, Hosten N, Bülow R, Zaitsev M, Kauczor HU, Bamberg F, Günther M, Schlett CL (2023) Automated image quality assessment for selecting among multiple magnetic resonance image acquisitions in the German National Cohort study. Sci Rep 13:22745
Schuppert C, von Krüchten R, Hirsch J, Hoinkiss DC, Kaaks R, Bamberg F, Kauczor HU, Günther M, Schlett C (2023) Ganzkörper-Magnetresonanztomographien in der NAKO Gesundheitsstudie: Anwendung einer automatisierten Bildqualitätsanalyse zur Vorhersage der empfunden Bildqualität. 104. Deutscher Röntgenkongress. 195(S 01): S40
Schuppert C, von Krüchten R, Hirsch J, Hoinkiss DC, Kaaks R, Bamberg F, Kauczor HU, Günther M, Schlett C (2023) Whole-Body Magnetic Resonance Imaging in the Large Population-Based German National Cohort Study (NAKO): Use of an Automated Image Quality Assessment for the Prediction of Perceived Image Quality. European Congress of Radiology
Sommer L, Hoinkiss DC, Huber J, Konstandin S, Günther M (2023) Feasibility Study to Spatially Map the Filtration Function of the Kidneys with Multi-TE Arterial Spin Labeling. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 2760
Turhan G, Cetin A, Mahroo A, Padrela B, Konstandin S, Hoinkiss DC, Breutigam NJ, Eickel K, Petr J, Mutsaerts H, Danyeli A, Ozduman K, Günther M, Dincer A, Ozturk-Isik E (2023) Perfusion and Time of Exchange Measurements Using BBB-ASL in Gliomas: The Initial Experience. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 1757
Winata S, Hoinkiss DC, Keith G, al-Wasity S, Porter D (2023) Multislice-to-volume Prospective Motion Correction for Functional MRI Protocols at 7T. Proceedings of the ISMRM & ISMRT Annual Meeting & Exhibition. 1830
Winata S, Hoinkiss DC, Keith GA, al-Wasity S, Porter D (2023) Real-time multislice-to-volume motion correction for task-based functional MRI at 7 T. Proceedings of the 39th Annual Scientific Meeting of the ESMRMB. LT51
Winata S, Hoinkiss DC, Keith GA, al-Wasity S, Porter DA (2023) Prospective motion correction for functional MRI at 7T using multislice-to-volume image registration. 29th Organisation of Human Brain Mapping Annual Meeting (OHBM 2023)
Winata S, Hoinkiss DC, Keith GA, Williams SN, Ding BY, al-Wasity S, Shajan G, Porter D (2023) Parallel transmit imaging with real-time multislice-to-volume motion correction for task-based functional MRI at 7 T. Proceedings of the 39th Annual Scientific Meeting of the ESMRMB. P176

2022

Breutigam N-J, Günther M, Hoinkiss DC, Eickel K, Frost R, Buck MA, Porter DA (2022) Combined acquisition of diffusion and T2*-weighted measurements using simultaneous multi-contrast magnetic resonance imaging. Magn Reson Mater Phy 35(3):421–440
Hoinkiss DC, Porter DA (2022) Diffusion Imaging. In: Kouwe A, Andre J (eds) Motion Correction in MR. Advances in Magnetic Resonance Technology and Applications 6, pp 461–479
Hoinkiss DC, Konstandin S, Günther M (2022) Constraint-Based MRI Sequence Optimization in a Scanner-Independent MRI Framework. Proceedings of the Joint Annual Meeting of the ISMRM and the ESMRMB. 2770
Huber J, Günther M, Channaveerappa M, Hoinkiss DC (2022) Towards Free Breathing 3D ASL Imaging of the Human Liver using Prospective Motion Correction. Magn Reson Med 88(2):711–726
Huber J, Hoinkiss DC, Channaveerappa M, Günther M (2022) Free Breathing 3D ASL Imaging of the Human Liver using Prospective Motion Correction: Preliminary Results. Proceedings of the ISMRM Workshop on Perfusion MRI ‘From Head to Toe’
Huber J, Hoinkiss DC, Channaveerappa M, Günther M (2022) Free Breathing 3D ASL Imaging of the Human Liver using Prospective Motion Correction: Preliminary Results. Proceedings of the Joint Annual Meeting of the ISMRM and the ESMRMB. 72
Huber J, Hoinkiss DC, Channaveerappa M, Günther M (2022) Multi PLD/Multi TE Perfusion Data of the Human Liver Assessed by Pseudo-Continuous Arterial Spin Labeling. Proceedings of the ISMRM Workshop on Perfusion MRI ‘From Head to Toe’
Huber J, Hoinkiss DC, Günther M (2022) Joint estimation and correction of motion and geometric distortion in segmented arterial spin labeling. Magn Reson Med 87(4):1876–1885
Schuppert C, v. Kruechten R, Hirsch JG, Rospleszcz S, Hoinkiss DC, Selder S, Köhn A, v. Stackelberg O, Peters A, Völzke H, Niendorf T, Forsting M, Hosten N, Hendel T, Pischon T, Jöckel K, Kaaks R, Bamberg F, Kauczor H, Günther M, Schlett C, the German National Cohort MRI Study Investigators (2022) Whole-Body Magnetic Resonance Imaging in the Large Population-Based German National Cohort Study. Invest Radiol 57(7):478–487

2021

Breutigam NJ, Hoinkiss DC, Buck M, Eickel K, Guenther M, Porter D (2021) Evaluation of Saturation Effects in Simultaneous Multi-Contrast (SMC) Imaging. Proceedings of the 29th Annual Meeting of the ISMRM. 1330
Hoinkiss DC, Nijsink H, Borm P, Haase S, Futterer J, Strehlow J, Paetz T (2021) Real-Time Slice Steering for MR-Guided Interventions Using Endovascular Devices Equipped with Passive MRI Markers. Proceedings of the 29th Annual Meeting of the ISMRM. 0854
Huber J, Channaveerappa M, Hoinkiss DC, Günther M (2021) Towards Free-Breathing Liver Perfusion Imaging (Using Prospective Motion Correction). Proceedings of the 38th Annual Scientific Meeting of the ESMRMB. S4.P7
Huber J, Hoinkiss DC, Günther M (2021) Adaptive Adjustment of Background Suppression in Pseudo-Continuous Arterial Spin Labeling. Proceedings of the 38th Annual Scientific Meeting of the ESMRMB. S4.P5
Huber J, Hoinkiss DC, Guenther M (2021) Joint Estimation and Correction of Motion and Geometric Distortion in Segmented 3D Arterial Spin Labeling. Proceedings of the 29th Annual Meeting of the ISMRM. 0468
Huber J, Hoinkiss DC, Guenther M (2021) Robust Implementation of a 3D Pulsed ASL Sequence for Assessment of Liver Perfusion. Proceedings of the 29th Annual Meeting of the ISMRM. 2737
Wilke RN, Konstandin S, Hoinkiss DC, Uecker M, Guenther M (2021) Visual Remote Control of MRI Reconstruction Toolboxes. Proceedings of the 29th Annual Meeting of the ISMRM. 3770
Winata S, Hoinkiss DC, Keith GA, Porter DA, Günther M (2021) Image Registration Shortcut for Prospective Motion Correction Using Unseparated Multiband Slices. Proceedings of the 38th Annual Scientific Meeting of the ESMRMB. S3.P27
Winata S, Hoinkiss DC, Keith GA, Porter DA, Günther M (2021) Optimisation of Navigator Parameter for MS-PACE Prospective Motion Correction. Proceedings of the BIC & Iberian Chapter of ISMRM Post Graduate Meeting

2020

Breutigam NJ, Hoinkiss DC, Buck MA, Mahroo A, von Samson-Himmelstjerna F, Guenther M (2020) Optimal subject-specific pCASL settings by automated inner-scan timing adaption. Proceedings of the 28th Annual Meeting of the ISMRM. 3282
Hoinkiss DC, Cordes C, Konstandin S, Guenther M (2020) Event-Based Traversing of Hierarchical Sequences Allows Real-Time Execution and Arbitrary Looping in a Scanner-Independent MRI Framework. Proceedings of the 28th Annual Meeting of the ISMRM. 1043
Hoinkiss DC, Nijsink H, Borm P, Hussain T, Greer J, Haase S, Futterer J, Pätz T (2020) Guidewire Tracking Based on Passive MRI Markers for MR-Guided Endovascular Interventions. Proceedings of the 37th Annual Scientific Meeting of the ESMRMB. L01.19
Hoinkiss DC, Struckmann S, Werner N, Schmidt CO, Günther M, Hirsch J (2020) Long-Time Stability of Image Quality in the German National Cohort (NAKO) Imaging Study Based on Automatic Image Quality Assessment. Proceedings of the 37th Annual Scientific Meeting of the ESMRMB. L01.124
Huber J, Hoinkiss DC, Guenther M (2020) Subject-specific background suppression in 3D pseudo-continuous arterial spin labeling perfusion imaging. Proceedings of the 28th Annual Meeting of the ISMRM. 3283

2019

Archipovas S, Wilke RN, Konstandin S, Huber J, Hoinkiss DC, Cordes C, Breutigam NJ, Guenther M (2019) A prototype of a fully integrated environment for a collaborative work in MR sequence development for a reproducible research. Proceedings of the 27th Annual Meeting ISMRM. 0945
Breutigam NJ, Buck MA, Hoinkiss DC, von Samson-Himmelstjerna F, Günther M (2019) Automated Subject-Specific Adaption of pCASL Timing Parameters in Real Time. Proceedings of the University of Michigan International Workshop on Arterial Spin Labeling MRI: Technical Updates and Clinical Experience. 27
Hoinkiss DC, Cordes C, Konstandin S, Huber J, Wilke R, Günther M (2019) Real-Time Sequence Control for Prospective Motion Correction in a Dynamic, Platform-Independent MRI Framework. Proceedings of the 36th Annual Scientific Meeting of the ESMRMB. S14.02
Hoinkiss DC, Erhard P, Breutigam NJ, von Samson-Himmelstjerna F, Guenther M, Porter DA (2019) Prospective Motion Correction in Functional MRI Using Simultaneous Multislice Imaging and Multislice-to-Volume Image Registration. NeuroImage 200:159–173
Huber J, Hoinkiss DC, Vicari M, Günther M, Wilke R (2019) 3D Rigid Body Motion Correction in ASL-Perfusion Imaging Using 3D GRASE PROPELLER. Proceedings of the 36th Annual Scientific Meeting of the ESMRMB. P02.09
Schuppert C, von Krüchten R, Hirsch JG, Hoinkiss DC, von Stackelberg O, Kauczor HU, Bamberg F, Schlett CL (2019) Protocol Repetition in Whole-Body MR Imaging Within a Large Population-Based Cohort Study: Behavior of Radiologic Technologists and Potential of Automated Image Quality Assessment. Proceedings of the 2019 European Congress of Radiology. B-0019

2018

Hoinkiss DC (2018) Acquisition and Processing Techniques for Image-Based Prospective Motion Correction in Magnetic Resonance Imaging. Ph.D. thesis
Hoinkiss DC, Erhard P, Guenther M, Breutigam NJ, von Samson-Himmelstjerna F, Porter DA (2018) Prospective Motion Correction in Multiband fMRI Using Multislice-to-Volume Image Registration. Proceedings of the Joint Annual Meeting of the ISMRM and the ESMRMB. 1170

2017

Hirsch JG, Köhn A, Hoinkiss DC, Singe J, Öztürk EEB, Günther M, the NAKO MRI Investigators (2017) Quality Assessment in the Multicenter MR Imaging Study of the German National Cohort (NAKO). Proceedings of the 25th Annual Meeting of the ISMRM. 4458
Hoinkiss DC, Porter DA (2017) A Novel Approach to Prospective Motion Correction Using Multi-Slice-to-Volume Registration. Proceedings of the 25th Annual Meeting of the ISMRM. 299
Hoinkiss DC, Porter DA (2017) Prospective Motion Correction in 2D Multishot MRI Using EPI Navigators and Multislice-to-Volume Image Registration. Magn Reson Med 78(6):2127–2135
Hoinkiss DC, Porter DA (2017) Prospective Motion Correction in Diffusion-Weighted Imaging Using Intermediate Pseudo-Trace-Weighted Images. NeuroImage 149:1–14
Hoinkiss DC, Porter DA (2017) Prospective Motion Correction in Multi-Shot RARE Imaging Using Multi-Slice-to-Volume Image Registration. Proceedings of the 3rd ISMRM Workshop on Motion Correction in MRI & MRS, Cape Town, South Africa

2016

Cordes C, Honroth T, Hoinkiss DC, Archipovas S, Porter DA, Günther M (2016) Parameter Dependency in Modular MR Sequences using Directed Graphs. Proceedings of the 24th Annual Meeting of the ISMRM. 3198
Hirsch JG, Köhn A, Hoinkiss DC, Peter J, Thomsen A, Günther M, the German National Cohort MRI Study Investigators (2016) Fully Automated Data Management and Quality Assurance in Very Large Prospective Cohort MR Imaging Studies – the MR Imaging Study within the German National Cohort. Proceedings of the 24th Annual Meeting of the ISMRM. 0247
Hirsch JG, Köhn A, Hoinkiss DC, Singe J, Albers M, Aumann N, Guenther M, the NAKO MRI Study Investigators (2016) Quality Assessment in Very Large Prospective Multicenter Cohort MR Imaging Studies – the MR Imaging Study within the German National Cohort (NAKO). Proceedings of the 33rd Annual Scientific Meeting of the ESMRMB. 186
Hoinkiss DC, Porter DA (2016) Prospective Correction of Long-Term Subject Motion in Diffusion Tensor Imaging Using Intermediate, Pseudo-Trace-Weighted Images. Proceedings of the 33rd Annual Scientific Meeting of the ESMRMB. 170
Hoinkiss DC, Günther M, Porter DA (2016) Prospective Motion Correction in Diffusion Tensor Imaging using Intermediate Pseudo-Trace-Weighted Images. Proceedings of the 24th Annual Meeting of the ISMRM. 1844
Honroth T, Cordes C, Archipovas S, Hoinkiss DC, Günther M, Porter DA (2016) Platform-independent, rapid prototyping of MR sequences without code compilation. Proceedings of the 24th Annual Meeting of the ISMRM. 3207

2015

Hoinkiss DC, Porter DA (2015) Diffusion-Image-Based Motion Detection at High b-Value Using Intermediate, Pseudo-Trace-Weighted Images. Proceedings of the 32nd Annual Scientific Meeting of the ESMRMB. 322

2014

Hoinkiss DC (2014) Automatische Bildqualitätsanalyse von Magnetresonanz-Bildern im Frequenzraum. Master's thesis
Hoinkiss DC, Günther M (2014) Automatic Image Quality Assessment of Head MRI Study Data. Student Conference Medical Engineering Science 2014: Proceedings. 195